MirGeneDB ID | Ovu-Novel-16-v2 |
Family name |
COL-NOVEL-16 (all species) |
Seed |
CCGAUUG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-16-v1
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Orthologues |
Esc-Novel-16
Obi-Novel-16-v2
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01013033.1: 23749-23803 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CAGAUGAACGCAUCUCACGGGUCAACACGUUCCGAUUGUUCUAAGUCCGGCUCUUAGUUAAAAGCCGGACUUGAAAAAUCGGAGUGUGUGAGCCGAUUCAGACACGAGACGAACA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGAUGAACGCAUCUCA---| G A G U CUUA
CGG UCA CACGUUCCGAUU UUC AAGUCCGGCU G
GCC AGU GUGUGAGGCUAA AAG UUCAGGCCGA U
ACAAGCAGAGCACAGACUUA^ G - A - AAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | No |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Mature sequence |
Ovu-Novel-16-v2_5p |
mirBase accession | None |
Sequence |
0- UCCGAUUGUUCUAAGUCCGGCUC -23
Get sequence
|
Star sequence |
Ovu-Novel-16-v2_3p* |
mirBase accession | None |
Sequence |
33- GCCGGACUUGAAAAAUCGGAGU -55
Get sequence
|