| MirGeneDB ID | Ovu-Novel-28 |
|---|
| Family name |
COL-NOVEL-28 (all species) |
|---|
| Seed |
AGAAUUC |
|---|
| Species |
Common octopus (Octopus vulgaris) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Esc-Novel-28
Obi-Novel-28
|
|---|
| Node of Origin (locus) |
Coleoidea
|
|---|
| Node of Origin (family) |
Coleoidea
|
|---|
Genome context
(GCA_003957725.1_ASM395772v1_OVU) |
ref|NW_021835978.1|:73177-73311: 38-98 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACGAUGGCGAUAUUAUUCUAGCUGAGUCAAUGACAUAACUUGGAAUUUUAAAAUGUGUGACAGAAAUCAUAGAAUUCCAGGUUACGCCAGCGAUUCUCUAGACAAUUCGACAGACAUUGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACGAUGGCGAUAUUAUU---| CU AA ACA AAAUGUGUG
CUAG GAGUC UG UAACUUGGAAUUUUA \
GAUC CUUAG AC AUUGGACCUUAAGAU A
CCGUUACAGACAGCUUAACA^ U- CG CGC ACUAAAGAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Ovu-Novel-28_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGACAUAACUUGGAAUUUUAAA -22
Get sequence
|
|---|
| Mature sequence |
Ovu-Novel-28_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UAGAAUUCCAGGUUACGCCAGC -61
Get sequence
|
|---|
