MirGeneDB ID | Ovu-Novel-36 |
Family name |
COL-NOVEL-36 (all species) |
Seed |
AGCCCAG |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Esc-Novel-36
Obi-Novel-36
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01029509.1: 1784985-1785046 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GUGAAUUGCAGAACUAUCACAGUCUGAAGGCUUUUCCAUUCUUCUGCGGUAAUUCAACGCCAUGUCAGUGUAGCCCAGAUGAAUGGAAAGUCACCAGGUUGAUGCCAAACAACGGAACGAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GUGAAUUGCAGAACUAUCA--| GU AA U U C A UCAACGC
CA CUG GGCUUU CCAUUC UCUG GGU AU C
GU GAC CUGAAA GGUAAG AGAC CCG UG A
GUAGCAAGGCAACAAACCGUA^ UG CA - U - A UGACUGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Star sequence |
Ovu-Novel-36_5p* |
mirBase accession | None |
Sequence |
0- CUUUUCCAUUCUUCUGCGGUAAUU -24
Get sequence
|
Mature sequence |
Ovu-Novel-36_3p |
mirBase accession | None |
Sequence |
40- UAGCCCAGAUGAAUGGAAAGUC -62
Get sequence
|