MirGeneDB ID | Ovu-Novel-38-v1 |
Family name |
COL-NOVEL-38 (all species) |
Seed |
UCAUCAU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
Ovu-Novel-38-v2
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Orthologues |
Esc-Novel-38-v1
Obi-Novel-38-v1
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Node of Origin (locus) |
Coleoidea
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Node of Origin (family) |
Coleoidea
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01067064.1: 772-832 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUGGAUGUUGAUCCAACAGAUAGAGCCAGUACAGCCUUGCAGAUGGUCAAAUACGUUUUAGGAAGACAUUUCAUCAUUCACAAGGCUGCACUGUCGCUGUCUACAUCAACAUUAGAGCCUU
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGGAUGUUGAUCCAAC--| AGC A CA C ACGUUUU
AGAUAG CAGU CAGCCUUG GAUGGU AAAU \
UCUGUC GUCA GUCGGAAC UUACUA UUUA A
UUCCGAGAUUACAACUACA^ GCU C AC C CAGAAGG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Star sequence |
Ovu-Novel-38-v1_5p* |
mirBase accession | None |
Sequence |
0- ACAGCCUUGCAGAUGGUCAAAU -22
Get sequence
|
Mature sequence |
Ovu-Novel-38-v1_3p |
mirBase accession | None |
Sequence |
39- UUCAUCAUUCACAAGGCUGCAC -61
Get sequence
|