MirGeneDB ID | Ovu-Novel-56 |
Family name |
OCT-NOVEL-56 (all species) |
Seed |
GCCCUAU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Obi-Novel-56
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Node of Origin (locus) |
Octopus
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Node of Origin (family) |
Octopus
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Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01009251.1: 9145-9205 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCUUUCAGGAAUAUAUUUUAGACACUGCUCUGCCCUAUAAAUGGUCCCCGUGUUAAUAUAUAUAUAACGGGUAUCAUUUAUAUAGGGUGUAGGAAUGUCUUUAUGCACAACUUCCUGAAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUUUCAGGAAUAUAUUUU-- ---| UCU -- C GUUAAUA
AGACA CUGC GCCCUAUA AAUGGU CCCGU \
UCUGU GAUG UGGGAUAU UUACUA GGGCA U
UAAAGUCCUUCAACACGUAUU AAG^ --- AU U AUAUAUA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
Ne |
No |
No |
No |
No |
No |
No |
No |
No |
No |
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Mature sequence |
Ovu-Novel-56_5p |
mirBase accession | None |
Sequence |
0- UGCCCUAUAAAUGGUCCCCGUG -22
Get sequence
|
Star sequence |
Ovu-Novel-56_3p* |
mirBase accession | None |
Sequence |
37- CGGGUAUCAUUUAUAUAGGGUGUA -61
Get sequence
|