MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-1269

Family name MIR-1269 (all species)
Seed UGGACUG
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-1269  Mml-Mir-1269 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054682.2: 50871184-50871247 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCACUAGAUUGCCUAGAACAGGGAAGCCAGUUGGCGUGGCUCAGUCCAAGUCUGACGACCUGAGGAAUGCCUGGACUGAGCCAUGCUACUGGCUUCCCUGGUCUCCAGCUUGCAGAUGGUCU
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Structure
        10          20        30        40        50        60  
UACCACUAGAUUGCCUA--| A             U                A  CUGACGAC 
                   GA CAGGGAAGCCAGU GGCGUGGCUCAGUCCA GU        \
                   CU GUCCCUUCGGUCA UCGUACCGAGUCAGGU CG        C
UCUGGUAGACGUUCGACCU^ G             -                C  UAAGGAGU 
  120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-1269_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUUGGCGUGGCUCAGUCCAAGU -23
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Mature sequence

Pab-Mir-1269_3p

mirBase accessionNone
Sequence
42- CUGGACUGAGCCAUGCUACUGG -64
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