MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-3909

Family name MIR-3909 (all species)
Seed GUCCUCU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-3909  Mml-Mir-3909 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM068844.1: 41873531-41873592 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUUUGCUGUUGCGCCGUCAUUCCUCUGGGGAGCAGGCCCCGGGGGACAGGGAAAAGCACACAAGGAACUUGUCCUCUAGGGCCUGCAGUCUCACGGGAGAGUAACAUGCACCUGGACCGCC
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Structure
        10        20         30          40        50          
GGUUUGCUGUUGCGCCGUC    CU   -    --|       CG         GAAAAGCA 
                   AUUC  CUG GGGA  GCAGGCCC  GGGGACAGG        \
                   UGAG  GGC CUCU  CGUCCGGG  CUCCUGUUC        C
CCGCCAGGUCCACGUACAA    AG   A    GA^       AU         AAGGAACA 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br Li Li
Star sequence

Pab-Mir-3909_5p* (predicted)

mirBase accessionNone
Sequence
0- GAGCAGGCCCCGGGGGACAGG -21
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Mature sequence

Pab-Mir-3909_3p (predicted)

mirBase accessionNone
Sequence
40- UGUCCUCUAGGGCCUGCAGUCU -62
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