MirGeneDB ID | Pab-Mir-3934 |
Family name |
MIR-3934 (all species) |
Seed |
CAGGUGU |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-3934
Mml-Mir-3934
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Catarrhini
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054684.2: 33946661-33946721 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GCUCCACACAGCCCUUCCUGUCCCCAAUUUUCAGGUGUGGAAUCUGAGGCAGGAAGCAGUGAAGUAACUUGCUCAGGUUGCACAGCUGGGAAGUGGAGCAGGGAUUUGGAUCCUUGUGUGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GCUCCACACAGCCCUUC---| CC A UU G G G AAGCAG
CUGU CCA UU CAG UGUG AAUCUGAG CAGG U
GACG GGU AA GUC ACAC UUGGACUC GUUC G
UGUGUGUUCCUAGGUUUAGG^ A- G GG G G - AAUGAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-3934_5p |
mirBase accession | None |
Sequence |
0- UCAGGUGUGGAAUCUGAGGCAGG -23
Get sequence
|
Co-mature sequence |
Pab-Mir-3934_3p (predicted) |
mirBase accession | None |
Sequence |
39- UGCUCAGGUUGCACAGCUGGGA -61
Get sequence
|