MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-3934

Family name MIR-3934 (all species)
Seed CAGGUGU
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-3934  Mml-Mir-3934 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054684.2: 33946661-33946721 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCUCCACACAGCCCUUCCUGUCCCCAAUUUUCAGGUGUGGAAUCUGAGGCAGGAAGCAGUGAAGUAACUUGCUCAGGUUGCACAGCUGGGAAGUGGAGCAGGGAUUUGGAUCCUUGUGUGU
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Structure
        10           20        30        40        50        60
GCUCCACACAGCCCUUC---|   CC   A  UU   G    G        G    AAGCAG 
                    CUGU  CCA UU  CAG UGUG AAUCUGAG CAGG      U
                    GACG  GGU AA  GUC ACAC UUGGACUC GUUC      G
UGUGUGUUCCUAGGUUUAGG^   A-   G  GG   G    G        -    AAUGAA 
 .       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-3934_5p

mirBase accessionNone
Sequence
0- UCAGGUGUGGAAUCUGAGGCAGG -23
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Co-mature sequence

Pab-Mir-3934_3p (predicted)

mirBase accessionNone
Sequence
39- UGCUCAGGUUGCACAGCUGGGA -61
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