MirGeneDB ID | Pab-Mir-5581 |
Family name |
MIR-5581 (all species) |
Seed |
CCUUCCA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-5581
Mml-Mir-5581
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Catarrhini
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054679.2: 196033957-196034015 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUAGAGUAAGGAGUUUUGCUGGCCUCAAGCCUUCCAGGAGAAAUGGAGACCCUAUACAUACCUGUUUCCAUGCCUCCUAGAAGUUCCGAAGCCAGGGUAAGAUUCCUUGUUCUAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUAGAGUAAGGAGUUUUG--| C AAGC C AA CCUAUA
CUGGC UC CUUC AGGAG AUGGAGAC \
GACCG AG GAAG UCCUC UACCUUUG C
AAGAUCUUGUUCCUUAGAAUGG^ A CCUU A CG UCCAUA
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Pab-Mir-5581_5p (predicted) |
mirBase accession | None |
Sequence |
0- GCCUUCCAGGAGAAAUGGAGAC -22
Get sequence
|
Co-mature sequence |
Pab-Mir-5581_3p (predicted) |
mirBase accession | None |
Sequence |
37- UUCCAUGCCUCCUAGAAGUUCC -59
Get sequence
|