MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-5581

Family name MIR-5581 (all species)
Seed CCUUCCA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-5581  Mml-Mir-5581 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054679.2: 196033957-196034015 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUAGAGUAAGGAGUUUUGCUGGCCUCAAGCCUUCCAGGAGAAAUGGAGACCCUAUACAUACCUGUUUCCAUGCCUCCUAGAAGUUCCGAAGCCAGGGUAAGAUUCCUUGUUCUAGAA
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Structure
        10        20          30        40        50         
UUCUAGAGUAAGGAGUUUUG--|    C  AAGC    C     AA        CCUAUA 
                      CUGGC UC    CUUC AGGAG  AUGGAGAC      \
                      GACCG AG    GAAG UCCUC  UACCUUUG      C
AAGAUCUUGUUCCUUAGAAUGG^    A  CCUU    A     CG        UCCAUA 
       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-5581_5p (predicted)

mirBase accessionNone
Sequence
0- GCCUUCCAGGAGAAAUGGAGAC -22
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Co-mature sequence

Pab-Mir-5581_3p (predicted)

mirBase accessionNone
Sequence
37- UUCCAUGCCUCCUAGAAGUUCC -59
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