MirGeneDB 3.0

MirGeneDB ID

Pab-Mir-624

Family name MIR-624 (all species)
Seed AGUACCA
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Hsa-Mir-624  Mml-Mir-624 
Node of Origin (locus) Catarrhini
Node of Origin (family) Catarrhini
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)
CM054694.2: 34644118-34644175 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUUGACCAAUAUAUAAUGCUGUUUCGAGGUAGUACCAGUACCUUGUGUUCAGUGGAACCAAGGUAAACACAAGGUAUUGGUAUUACCUUGAGAUAGCAUUACACCUAAGUGGUUUCA
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Structure
        10          20        30        40        50        
UUUUGACCAAUAUAUAA--|                                CAGUGGA 
                   UGCUGUUUCGAGGUAGUACCAGUACCUUGUGUU       A
                   ACGAUAGAGUUCCAUUAUGGUUAUGGAACACAA       C
ACUUUGGUGAAUCCACAUU^                                AUGGAAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Br Li Li
Mature sequence

Pab-Mir-624_5p

mirBase accessionNone
Sequence
0- UAGUACCAGUACCUUGUGUUCA -22
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Star sequence

Pab-Mir-624_3p* (predicted)

mirBase accessionNone
Sequence
36- AACACAAGGUAUUGGUAUUACC -58
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