MirGeneDB ID | Pab-Mir-624 |
Family name |
MIR-624 (all species) |
Seed |
AGUACCA |
Species |
Sumatran orangutan (Pongo abelii) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Hsa-Mir-624
Mml-Mir-624
|
Node of Origin (locus) |
Catarrhini
|
Node of Origin (family) |
Catarrhini
|
Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054694.2: 34644118-34644175 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUUUGACCAAUAUAUAAUGCUGUUUCGAGGUAGUACCAGUACCUUGUGUUCAGUGGAACCAAGGUAAACACAAGGUAUUGGUAUUACCUUGAGAUAGCAUUACACCUAAGUGGUUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUUGACCAAUAUAUAA--| CAGUGGA
UGCUGUUUCGAGGUAGUACCAGUACCUUGUGUU A
ACGAUAGAGUUCCAUUAUGGUUAUGGAACACAA C
ACUUUGGUGAAUCCACAUU^ AUGGAAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UGUG in loop |
Tissue expression
|
|
Mature sequence |
Pab-Mir-624_5p |
mirBase accession | None |
Sequence |
0- UAGUACCAGUACCUUGUGUUCA -22
Get sequence
|
Star sequence |
Pab-Mir-624_3p* (predicted) |
mirBase accession | None |
Sequence |
36- AACACAAGGUAUUGGUAUUACC -58
Get sequence
|