| MirGeneDB ID | Pab-Mir-7706 |
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| Family name |
MIR-7706 (all species) |
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| Seed |
GAAGCGC |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Hsa-Mir-7706
Mml-Mir-7706
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| Node of Origin (locus) |
Catarrhini
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| Node of Origin (family) |
Catarrhini
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054695.2: 88461211-88461270 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CGGCUUUCGGCGCAUGCGCGGGCUGGGGCUGUGUGUAGGGCCAGCGCGGAGCCCGAGCAGCCGCGGUGAAGCGCCUGUGCUCGGCCGAGAGUGCUGUGCCCAUUGCUCGCCUCAGUCGCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CGGCUUUCGGCGCAUGCGC - G G- U A - -| GGA CGAGC
GGGC UGG GCU UG GU GGGC CA GCGC GCC \
CCCG GUC UGA GC CG CUCG GU CGCG UGG A
CCGCUGACUCCGCUCGUUA U G GA - G U C^ AAG CGCCG
. 110 100 90 80 70 60 |
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| Deep sequencing |
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| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Pab-Mir-7706_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GUGUGUAGGGCCAGCGCGGAGCC -23
Get sequence
|
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| Mature sequence |
Pab-Mir-7706_3p (predicted) |
| mirBase accession | None |
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| Sequence |
36- UGAAGCGCCUGUGCUCGGCCGAGA -60
Get sequence
|
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