| MirGeneDB ID | Pab-Mir-7706 |
|---|---|
| Family name | MIR-7706 (all species) |
| Seed | GAAGCGC |
| Species | Sumatran orangutan (Pongo abelii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Hsa-Mir-7706 Mml-Mir-7706 |
| Node of Origin (locus) | Catarrhini |
| Node of Origin (family) | Catarrhini |
| Genome context (GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054695.2: 88461211-88461270 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | CGGCUUUCGGCGCAUGCGCGGGCUGGGGCUGUGUGUAGGGCCAGCGCGGAGCCCGAGCAGCCGCGGUGAAGCGCCUGUGCUCGGCCGAGAGUGCUGUGCCCAUUGCUCGCCUCAGUCGCCGet precursor sequence |
| Structure | 10 20 30 40 50 CGGCUUUCGGCGCAUGCGC - G G- U A - -| GGA CGAGC GGGC UGG GCU UG GU GGGC CA GCGC GCC \ CCCG GUC UGA GC CG CUCG GU CGCG UGG A CCGCUGACUCCGCUCGUUA U G GA - G U C^ AAG CGCCG . 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Pab-Mir-7706_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GUGUGUAGGGCCAGCGCGGAGCC -23
Get sequence
|
| Mature sequence | Pab-Mir-7706_3p (predicted) |
| mirBase accession | None |
| Sequence |
36- UGAAGCGCCUGUGCUCGGCCGAGA -60
Get sequence
|
