| MirGeneDB ID | Pab-Mir-7854 |
|---|
| Family name |
MIR-7854 (all species) |
|---|
| Seed |
GAGGUGG |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Hsa-Mir-7854
|
|---|
| Node of Origin (locus) |
Hominidae
|
|---|
| Node of Origin (family) |
Hominidae
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054697.2: 80948505-80948565 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CAGGAGGCAGUGAACCUCUCCUGCCCCUUCCUUCCAUCUUCAUCACCUUGAGCAUCUUCUGGGCAGCUGAGGUGGCCGCAGAUGGGAAGGAAGGGCCCAGAGAUGAGGAUUUUCUUCUCUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAGGAGGCAGUGAACCUC - C- - UCA-| G CAUCUU
UC CUG CCCUUCCUU CCAUCU UCACCUU AG C
AG GAC GGGAAGGAA GGUAGA GGUGGAG UC U
CUCUCUUCUUUUAGGAGU A CC G CGCC^ - GACGGG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pab-Mir-7854_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CUUCCAUCUUCAUCACCUUGAG -22
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-7854_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- UGAGGUGGCCGCAGAUGGGAAGGA -61
Get sequence
|
|---|
