MirGeneDB 3.0

MirGeneDB ID

Pau-Mir-5045

Family name MIR-5045 (all species)
Seed AGAGAUU
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Lan-Mir-5045 
Node of Origin (locus) Lophophorata
Node of Origin (family) Lophophorata
Genome context
(Phoronis_australis_GCA_002633005)
NMRA01000039.1: 397719-397776 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCAACACCAACUGAUUCCUAAUGUGCGGAGUCUAAAAGCUAGUCUCUAGAGAUAUCCAACCUUCUAGAGAUUUUCUUUUGGUCUACAUACACAAGGAAUUACCACCUGAAACUUCC
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Structure
        10          20        30        40        50        
UUGCAACACCAACUGAU--|   AA    CGG  U       CU          GAUAU 
                   UCCU  UGUG   AG CUAAAAG  AGUCUCUAGA     C
                   AGGA  ACAU   UC GGUUUUC  UUAGAGAUCU     C
CCUUCAAAGUCCACCAUUA^   AC    ACA  U       UU          UCCAA 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Pau-Mir-5045_5p* (predicted)

mirBase accessionNone
Sequence
0- AGUCUAAAAGCUAGUCUCUAGA -22
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Mature sequence

Pau-Mir-5045_3p

mirBase accessionNone
Sequence
36- UAGAGAUUUUCUUUUGGUCUAC -58
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