MirGeneDB ID | Pdu-Novel-1 |
Family name |
PDU-NOVEL-1 (all species) |
Seed |
CUGUUCG |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
P. dumerilii
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Node of Origin (family) |
P. dumerilii
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000001.1: 123154193-123154248 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAGGACGACGAGAGUUGGGGGCUGGUGGGAUCGAAUCCCGUCCCGGACAUGACUGGUGAUCUGUCUGUUCGUCGCGGGAUGAGACCCCAAGGCUCGCCUAUCAUCCGGGAUCUUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGGACGACGAGAGUUGG---| GG A GA CC U UGGU
GGGCU UGGG UC AUCCCGU CGGACA GAC \
CUCGG ACCC AG UAGGGCG GCUUGU CUG G
CGUUCUAGGGCCUACUAUCCG^ A- C AG CU - UCUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Novel-1_5p* |
mirBase accession | None |
Sequence |
0- UCGAAUCCCGUCCCGGACAUGAC -23
Get sequence
|
Mature sequence |
Pdu-Novel-1_3p |
mirBase accession | None |
Sequence |
33- UCUGUUCGUCGCGGGAUGAGACC -56
Get sequence
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