MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-1

Family name PDU-NOVEL-1 (all species)
Seed CUGUUCG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000001.1: 123154193-123154248 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGGACGACGAGAGUUGGGGGCUGGUGGGAUCGAAUCCCGUCCCGGACAUGACUGGUGAUCUGUCUGUUCGUCGCGGGAUGAGACCCCAAGGCUCGCCUAUCAUCCGGGAUCUUGC
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Structure
        10           20        30        40        50        
AAGGACGACGAGAGUUGG---|    GG    A  GA       CC      U   UGGU 
                     GGGCU  UGGG UC  AUCCCGU  CGGACA GAC    \
                     CUCGG  ACCC AG  UAGGGCG  GCUUGU CUG    G
CGUUCUAGGGCCUACUAUCCG^    A-    C  AG       CU      -   UCUA 
    110       100        90         80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-1_5p*

mirBase accessionNone
Sequence
0- UCGAAUCCCGUCCCGGACAUGAC -23
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Mature sequence

Pdu-Novel-1_3p

mirBase accessionNone
Sequence
33- UCUGUUCGUCGCGGGAUGAGACC -56
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