MirGeneDB ID | Pdu-Novel-2 |
Family name |
PDU-NOVEL-2 (all species) |
Seed |
AGCACCG |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
P. dumerilii
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Node of Origin (family) |
P. dumerilii
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000015.1: 6298127-6298183 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
GAUUCCUAAUGAAGAAUAUUUGGCCAGUAUUCUGGUAUAUGUUGAGUGCUGGUGAAUUAAGCUAUUAGCACCGACAGGUACUGGGAUGUUUGCCUUCAAAUUCGGCAGACCUACAAU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUUCCUAAUGAAGAAUAUUU--| C UG A A GAAU
GGC AGUAUUC GUAU UGUUG GUGCUGGU U
CCG UUGUAGG CAUG ACAGC CACGAUUA A
UAACAUCCAGACGGCUUAAACUU^ U GU G - UCGA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- UCUGGUAUAUGUUGAGUGCUGGU -23
Get sequence
|
Mature sequence |
Pdu-Novel-2_3p |
mirBase accession | None |
Sequence |
35- UAGCACCGACAGGUACUGGGAU -57
Get sequence
|