MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-2

Family name PDU-NOVEL-2 (all species)
Seed AGCACCG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000015.1: 6298127-6298183 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUCCUAAUGAAGAAUAUUUGGCCAGUAUUCUGGUAUAUGUUGAGUGCUGGUGAAUUAAGCUAUUAGCACCGACAGGUACUGGGAUGUUUGCCUUCAAAUUCGGCAGACCUACAAU
Get precursor sequence
Structure
        10        20          30        40        50        
GAUUCCUAAUGAAGAAUAUUU--|  C       UG    A     A        GAAU 
                       GGC AGUAUUC  GUAU UGUUG GUGCUGGU    U
                       CCG UUGUAGG  CAUG ACAGC CACGAUUA    A
UAACAUCCAGACGGCUUAAACUU^  U       GU    G     -        UCGA 
     110       100        90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-2_5p*

mirBase accessionNone
Sequence
0- UCUGGUAUAUGUUGAGUGCUGGU -23
Get sequence
Mature sequence

Pdu-Novel-2_3p

mirBase accessionNone
Sequence
35- UAGCACCGACAGGUACUGGGAU -57
Get sequence