MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-3

Family name PDU-NOVEL-3 (all species)
Seed GCAGAGA
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000007.1: 5573703-5573761 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GUAGAAACAAAGUGAAGAGUGGCUCUAAGUUCCAAGCACUCAUUUAGGCACAUGUUUCUUCAAAGUGUGCAGAGAUGUGUGCCUGGCGCCAGGGGUCACUCAAGUCAACAAGGAAACAA
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Structure
        10          20        30        40        50         
GUAGAAACAAAGUGAAG--|        AA  U   A    U     AG     UGUUUC 
                   AGUGGCUCU  GU CCA GCAC CAUUU  GCACA      \
                   UCACUGGGG  CG GGU CGUG GUAGA  CGUGU      U
AACAAAGGAACAACUGAAC^        AC  C   C    U     GA     GAAACU 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-3_5p*

mirBase accessionNone
Sequence
0- UCCAAGCACUCAUUUAGGCACA -22
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Mature sequence

Pdu-Novel-3_3p

mirBase accessionNone
Sequence
37- UGCAGAGAUGUGUGCCUGGCGC -59
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