MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-5

Family name PDU-NOVEL-5 (all species)
Seed AAGCACC
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000024.1: 3948703-3948768 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUAUAUGAUACAAAGAAAUGAAAUUUGCAACCUGGUACAUAGUGUGAGCUUGUUUAUUUAUAACAAAAAAAAAUAAGCACCACAAUGUACUAGAAUGUUAUUUCAUAUUCAGUCAUAGAAUCUGAU
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Structure
        10           20        30        40        50        60   
UUAUAUGAUACAAAGAA---|      UU   AC         A   UGA       UAUUUAUA 
                    AUGAAAU  GCA  CUGGUACAU GUG   GCUUGUU        \
                    UACUUUA  UGU  GAUCAUGUA CAC   CGAAUAA        A
UAGUCUAAGAUACUGACUUA^      U-   AA         A   CA-       AAAAAAAC 
    120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-5_5p*

mirBase accessionNone
Sequence
0- CCUGGUACAUAGUGUGAGCUUGUU -24
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Mature sequence

Pdu-Novel-5_3p

mirBase accessionNone
Sequence
43- UAAGCACCACAAUGUACUAGAAU -66
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