MirGeneDB ID | Pdu-Novel-5 |
Family name |
PDU-NOVEL-5 (all species) |
Seed |
AAGCACC |
Species |
Dumerils clam worm (Platynereis dumerilii) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
P. dumerilii
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Node of Origin (family) |
P. dumerilii
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Genome context (GCA_026936325.1_EMBL_pdum_1.0) |
JAPTHN010000024.1: 3948703-3948768 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUAUAUGAUACAAAGAAAUGAAAUUUGCAACCUGGUACAUAGUGUGAGCUUGUUUAUUUAUAACAAAAAAAAAUAAGCACCACAAUGUACUAGAAUGUUAUUUCAUAUUCAGUCAUAGAAUCUGAU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUAUAUGAUACAAAGAA---| UU AC A UGA UAUUUAUA
AUGAAAU GCA CUGGUACAU GUG GCUUGUU \
UACUUUA UGU GAUCAUGUA CAC CGAAUAA A
UAGUCUAAGAUACUGACUUA^ U- AA A CA- AAAAAAAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
24 |
24 |
24 |
24 |
24 |
36 |
36 |
36 |
36 |
36 |
48 |
48 |
48 |
48 |
48 |
6d |
6d |
6d |
6d |
72 |
72 |
72 |
72 |
72 |
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Star sequence |
Pdu-Novel-5_5p* |
mirBase accession | None |
Sequence |
0- CCUGGUACAUAGUGUGAGCUUGUU -24
Get sequence
|
Mature sequence |
Pdu-Novel-5_3p |
mirBase accession | None |
Sequence |
43- UAAGCACCACAAUGUACUAGAAU -66
Get sequence
|