MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-6

Family name PDU-NOVEL-6 (all species)
Seed GACUCUU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000028.1: 2394592-2394652 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGACUACACGGAAACCUUGAAGCCUCCUGGAAUGAGGAUAGCAAGAGUGCGACCGAAAUACCCUCCUCGACUCUUGCUCAUCUUCAUGAUCUUGCGGCUGCAUCUACUUUUAUAUCUUCUC
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Structure
        10          20        30           40        50         
UGACUACACGGAAACCU--  A    UCCU   --        -|        G   CCGAAA 
                   UG AGCC    GGA  AUGAGGAU AGCAAGAGU CGA      U
                   AC UCGG    UCU  UACUUCUA UCGUUCUCA GCU      A
CUCUUCUAUAUUUUCAUCU  G    CGU-   AG        C^        -   CCUCCC 
 .       110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-6_5p*

mirBase accessionNone
Sequence
0- AAUGAGGAUAGCAAGAGUGCGAC -23
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Mature sequence

Pdu-Novel-6_3p

mirBase accessionNone
Sequence
37- CGACUCUUGCUCAUCUUCAUGAUC -61
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