MirGeneDB 3.0

MirGeneDB ID

Pdu-Novel-7

Family name PDU-NOVEL-7 (all species)
Seed UUUUGCU
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. dumerilii
Node of Origin (family) P. dumerilii
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)
JAPTHN010000001.1: 55158100-55158157 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GCCGUAUCUCCUAUUACACCCAGAACCCAGGGCCUGUGCCUUGGUGAACGCUUUGACUUCAUGAAGUUUUUGCUGAAACACAGGUGCUGGGUGCUGGGCUUGUCAACAAGUGAAAGAA
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Structure
        10          20        30        40        50        
GCCGUAUCUCCUAUUACA--|    A      G       CC UG UG  C   UUGAC 
                    CCCAG ACCCAG GCCUGUG  U  G  AA GCU     U
                    GGGUC UGGGUC UGGACAC  A  C  UU UGA     U
AAGAAAGUGAACAACUGUUC^    G      G       AA GU GU  U   AGUAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Star sequence

Pdu-Novel-7_5p*

mirBase accessionNone
Sequence
0- GGCCUGUGCCUUGGUGAACGCU -22
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Mature sequence

Pdu-Novel-7_3p

mirBase accessionNone
Sequence
36- UUUUUGCUGAAACACAGGUGCU -58
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