MirGeneDB 3.0
MirGeneDB ID

Ple-Novel-1

Family name PLE-NOVEL-1 (all species)
Seed UUCGUGC
Species Thorny-headed worm 2 (Pomphorhynchus laevis)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) P. laevis
Node of Origin (family) P. laevis
Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic)		 WNNJ02000321.1: 75404-75541 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGAUAUUAUUGUAUAACCAAAAGGAUUGAUGUUCUUCACCGACACGAAAUCAAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAACAUACAAUUUAAAAAGUUUAAAUAAACGAAUCGUCUUAAGUAUCUUUGAUUUCGUGCCGGUGAAGAACACAAAUCCCUUUGGUUAUACAAUAAUAUAUAUA
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Structure
        10         20        30        40        50        60        70        80        90         
AUUGAUAUUAUUGUAUA-|     A     GA            A         AAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAAC 
                  ACCAAA GGAUU  UGUUCUUCACCG CACGAAAUC                                             \
                  UGGUUU CCUAA  ACAAGAAGUGGC GUGCUUUAG                                             A
AUAUAUAUAAUAACAUAU^     C     AC            C         UUUCUAUGAAUUCUGCUAAGCAAAUAAAUUUGAAAAAUUUAACAU 
      190       180       170       160       150       140       130       120       110       100
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
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Star sequence

Ple-Novel-1_5p*
mirBase accessionNone
Sequence 
0- AUGUUCUUCACCGACACGAAAUC -23
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Mature sequence

Ple-Novel-1_3p
mirBase accessionNone
Sequence 
116- UUUCGUGCCGGUGAAGAACACA -138
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