| MirGeneDB ID | Ple-Novel-1 |
|---|---|
| Family name | PLE-NOVEL-1 (all species) |
| Seed | UUCGUGC |
| Species | Thorny-headed worm 2 (Pomphorhynchus laevis) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | P. laevis |
| Node of Origin (family) | P. laevis |
| Genome context (GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02000321.1: 75404-75541 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | AUUGAUAUUAUUGUAUAACCAAAAGGAUUGAUGUUCUUCACCGACACGAAAUCAAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAACAUACAAUUUAAAAAGUUUAAAUAAACGAAUCGUCUUAAGUAUCUUUGAUUUCGUGCCGGUGAAGAACACAAAUCCCUUUGGUUAUACAAUAAUAUAUAUAGet precursor sequence |
| Structure | 10 20 30 40 50 60 70 80 90 AUUGAUAUUAUUGUAUA-| A GA A AAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAAC ACCAAA GGAUU UGUUCUUCACCG CACGAAAUC \ UGGUUU CCUAA ACAAGAAGUGGC GUGCUUUAG A AUAUAUAUAAUAACAUAU^ C AC C UUUCUAUGAAUUCUGCUAAGCAAAUAAAUUUGAAAAAUUUAACAU 190 180 170 160 150 140 130 120 110 100 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Ple-Novel-1_5p* |
| mirBase accession | None |
| Sequence |
0- AUGUUCUUCACCGACACGAAAUC -23
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|
| Mature sequence | Ple-Novel-1_3p |
| mirBase accession | None |
| Sequence |
116- UUUCGUGCCGGUGAAGAACACA -138
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|
