| MirGeneDB ID | Ple-Novel-2 |
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| Family name |
PLE-NOVEL-2 (all species) |
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| Seed |
UUCGUGC |
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| Species |
Thorny-headed worm 2 (Pomphorhynchus laevis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. laevis
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| Node of Origin (family) |
P. laevis
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Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02000321.1: 75404-75541 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUUGAUAUUAUUGUAUAACCAAAAGGAUUGAUGUUCUUCACCGACACGAAAUCAAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAACAUACAAUUUAAAAAGUUUAAAUAAACGAAUCGUCUUAAGUAUCUUUGAUUUCGUGCCGGUGAAGAACACAAAUCCCUUUGGUUAUACAAUAAUAUAUAUA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60 70 80 90
AUUGAUAUUAUUGUAUA-| A GA A AAAGAUAUUUAAAACGUUUCGUUAAAAUGUUUAGAAAUAAAUAAC
ACCAAA GGAUU UGUUCUUCACCG CACGAAAUC \
UGGUUU CCUAA ACAAGAAGUGGC GUGCUUUAG A
AUAUAUAUAAUAACAUAU^ C AC C UUUCUAUGAAUUCUGCUAAGCAAAUAAAUUUGAAAAAUUUAACAU
190 180 170 160 150 140 130 120 110 100 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
|
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| Star sequence |
Ple-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- AUGUUCUUCACCGACACGAAAUC -23
Get sequence
|
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| Mature sequence |
Ple-Novel-2_3p |
| mirBase accession | None |
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| Sequence |
116- UUUCGUGCCGGUGAAGAACACA -138
Get sequence
|
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