| MirGeneDB ID | Ple-Novel-3 |
|---|
| Family name |
PLE-NOVEL-3 (all species) |
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| Seed |
CACCGGU |
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| Species |
Thorny-headed worm 2 (Pomphorhynchus laevis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
P. laevis
|
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| Node of Origin (family) |
P. laevis
|
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Genome context
(GCA_012934845.2_ASM1293484v2_PLE_genomic) |
WNNJ02001397.1: 5929-5983 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGACUAAUAUUUCUAAUAUUUCUAAUUACGAAUCGAAAUGUACUGAGUCAUAUAGUUAGUAUUAUCACCGGUAUAUUACGAUUCGCUGUUAGAAAUACUAACCUAUACAUUUUAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGACUAAUAUUUCUAAU--| UA A A C UAGU
AUUUCUAAU CGAAUCG AAUGUACUG GU AUA U
UAAAGAUUG GCUUAGC UUAUAUGGC CA UAU A
CAUUUUACAUAUCCAAUCA^ UC A - C UAUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Star sequence |
Ple-Novel-3_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AAUCGAAAUGUACUGAGUCAUA -22
Get sequence
|
|---|
| Mature sequence |
Ple-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
34- UCACCGGUAUAUUACGAUUCG -55
Get sequence
|
|---|
