MirGeneDB 2.1

MirGeneDB ID

Pma-Mir-4571

Family name MIR-4571 (all species)
Seed GUGUGUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-4571
Paralogues
Orthologues
Node of Origin (locus) P. marinus
Node of Origin (family) P. marinus
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046084.1: 7079058-7079119 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAUAUAGGACACAUGACCUGUGCGUGUAUAUGGAAUAUAUGUACACACAGGAUAUUACAUAAUCUACGUGUGUGUGCAGUAUAUUACAUUUAUGAGCUACAGUACUAUAUAGUGUCAAUAU
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Structure
        10         20         30        40         50          
ACAUAUAGGACACAUGAC-    -  GU   U   G      -|         GGAUAUUAC 
                   CUGU GC  GUA AUG AAUAUA UGUACACACA         \
                   GACA CG  UAU UAC UUAUAU ACGUGUGUGU         A
UAUAACUGUGAUAUAUCAU    U  AG   U   A      G^         GCAUCUAAU 
120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-4571_5p*

mirBase accessionMIMAT0019603
Sequence
0- AUGGAAUAUAUGUACACACAGG -22
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Mature sequence

Pma-Mir-4571_3p

mirBase accessionMIMAT0019604
Sequence
39- UGUGUGUGCAGUAUAUUACAUUU -62
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