| MirGeneDB ID | Pmi-Mir-2004 |
|---|
| Family name |
MIR-2004 (all species) |
|---|
| Seed |
CACACAC |
|---|
| Species |
Bat starfish (Patiria miniata) |
|---|
| MiRBase ID |
pmi-mir-2004
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Spu-Mir-2004
|
|---|
| Node of Origin (locus) |
Eleutherozoa
|
|---|
| Node of Origin (family) |
Eleutherozoa
|
|---|
Genome context
(Pmin1) |
JH775453.1: 21223-21282 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUGCUGUAAGAUAAAUGUCUUGGCCCCAGUCUUUCUGUGGUCGUCGUGUAAGGCUGAAUGCAGUAUCCUCACACACAACCACAGGAAGUUUGGUGUCUCAAGUCAUAGCAUCAUCAUGGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUGCUGUAAGAUAAAUGUCUU--| C U C C A CUGAAU
GGC CCAG CUUUCUGUGGU GU GUGU AGG \
CUG GGUU GAAGGACACCA CA CACA UCC G
UGGUACUACUACGAUACUGAACU^ U U A - C UAUGAC
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Pmi-Mir-2004_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUUUCUGUGGUCGUCGUGUAAGG -23
Get sequence
|
|---|
| Mature sequence |
Pmi-Mir-2004_3p |
| mirBase accession | MIMAT0032177 |
|---|
| Sequence |
38- UCACACACAACCACAGGAAGUU -60
Get sequence
|
|---|
