MirGeneDB 2.1

MirGeneDB ID

Rno-Mir-1955

Family name MIR-1955 (all species)
Seed GUCCCAG
Species Norway rat (Rattus norvegicus)
MiRBase ID
Paralogues
Orthologues Mmu-Mir-1955 
Node of Origin (locus) Muridae
Node of Origin (family) Muridae
Genome context
(rn6)
chr3: 81106509-81106571 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCUGUGAAAAGCUGGUUUACUUACUACAAGUCCCAGGGUGCACUGCACCUUUUUCUUAACUUCAGAUAAGAGCAUUGCAUGCUGGGAUAUGUAGUUGGUUUAAAUAGUACGGAGAACUCUU
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Structure
        10        20          30        40        50        60 
UUGCUGUGAAAAGCUGGUUU--|  U      A       G     C   AC   UUUCUUA 
                      ACU ACUACA GUCCCAG GUGCA UGC  CUU       A
                      UGG UGAUGU UAGGGUC UACGU ACG  GAA       C
UUCUCAAGAGGCAUGAUAAAUU^  U      A       G     U   A-   UAGACUU 
 120       110       100        90        80         70
Deep sequencing
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3' NTU Unknown
MotifsNo
Tissue expression
 +
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Mature sequence

Rno-Mir-1955_5p (predicted)

mirBase accessionNone
Sequence
0- AGUCCCAGGGUGCACUGCACCUU -23
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Star sequence

Rno-Mir-1955_3p* (predicted)

mirBase accessionNone
Sequence
41- GAGCAUUGCAUGCUGGGAUAUG -63
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