| MirGeneDB ID | Sha-Mir-12380 |
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| Family name |
MIR-12380 (all species) |
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| Seed |
UCCCUCC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Mdo-Mir-12380
Neu-Mir-12380
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| Node of Origin (locus) |
Marsupialia
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| Node of Origin (family) |
Marsupialia
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Genome context
(DEVIL_add) |
GL841586.1: 3856147-3856202 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUUCCCGCCAUGUACAGCCUGGGUACUCAUUCCCUCCUACGGCUCUCUGCAGAGGUACCAGAUGCAGAGGGAGGAGGUUGGGAUGAGUACUUAUGGCAGUGAUGCACCUUAAUGC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUUUCCCGCCAUGUACA- -| CU ACGG GAGGU
GCC UGGGUACUCAUUCC CCU CUCUCUGCA \
CGG AUUCAUGAGUAGGG GGA GGGAGACGU A
CGUAAUUCCACGUAGUGA U^ UU GGA- AGACC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Mir-12380_5p |
| mirBase accession | None |
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| Sequence |
0- UUCCCUCCUACGGCUCUCUGCA -22
Get sequence
|
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| Star sequence |
Sha-Mir-12380_3p* |
| mirBase accession | None |
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| Sequence |
35- CAGAGGGAGGAGGUUGGGAUG -56
Get sequence
|
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