| MirGeneDB ID | Sha-Novel-1 |
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| Family name |
SHA-NOVEL-1 (all species) |
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| Seed |
GGGCAGA |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867623.1: 1370576-1370635 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCCGAGUUGCUAUUUUGCAUUUACAAGACUCAGGAGUACGUGUAGUCCCUCUCGUUAGUCCAUUCCCAGAGGGCAGAUACGACUCUUGGUUUUGUGUGCUUUGGGCUUCCGGAUGGUCCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCCGAGUUGCUAUUUUGCAUU---| U A AGU CGUUAGU
UACAAGAC CAGGAGU CGUGU CCCUCU \
GUGUUUUG GUUCUCA GCAUA GGGAGA C
GCCUGGUAGGCCUUCGGGUUUCGU^ - - GAC CCCUUAC
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Derived for Dasyuridae. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Star sequence |
Sha-Novel-1_5p* |
| mirBase accession | None |
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| Sequence |
0- CAGGAGUACGUGUAGUCCCUCU -22
Get sequence
|
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| Mature sequence |
Sha-Novel-1_3p |
| mirBase accession | None |
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| Sequence |
39- AGGGCAGAUACGACUCUUGGU -60
Get sequence
|
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