| MirGeneDB ID | Sha-Novel-3 |
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| Family name |
SHA-NOVEL-3 (all species) |
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| Seed |
GUCCGGC |
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| Species |
Tasmanian devil (Sarcophilus harrisii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. harrisii
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| Node of Origin (family) |
S. harrisii
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Genome context
(DEVIL_add) |
GL867614.1: 335419-335477 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGCUGCAUUUUCAACUGCUGAGUUCCCACUGUCCGGCCUGAAGACACAUUGUGUGACCCUUUCAAACUAUGUAUUUUCAGACCUGAGUGGGCCCUUAGUACACACAUCAUCUUCUUCC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGGCUGCAUUUUCAACU--| UU UG C C C U GUGACC
GCUGAG CCCAC UC GG CUGAAGA ACAU GU \
UGAUUC GGGUG AG CC GACUUUU UGUA CA C
CCUUCUUCUACUACACACA^ CC -- U A A U AACUUU
110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Derived for DasyuroDcRNAphia. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| Bo |
Br |
He |
Ki |
Li |
Ly |
Pa |
Sk |
Sp |
Te |
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| Mature sequence |
Sha-Novel-3_5p |
| mirBase accession | None |
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| Sequence |
0- UGUCCGGCCUGAAGACACAUUGU -23
Get sequence
|
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| Co-mature sequence |
Sha-Novel-3_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UAUGUAUUUUCAGACCUGAGU -59
Get sequence
|
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