| MirGeneDB ID | Sha-Novel-4 |
|---|---|
| Family name | SHA-NOVEL-4 (all species) |
| Seed | GGCUAAG |
| Species | Tasmanian devil (Sarcophilus harrisii) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | S. harrisii |
| Node of Origin (family) | S. harrisii |
| Genome context (DEVIL_add) |
GL849918.1: 206081-206139 [-] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UUCCAAAAGAUGUACUGCUUGCCUUGGAGCUGGCUAAGGAUUUAGGGAAGGAGCUAAAUUAGGACUCUUCUCUUCAUCCAAAGCCUAGUUCCAACAUGGCUCUCCAUCUUGUCUGGCACGet precursor sequence |
| Structure | 10 20 30 40 50 UUCCAAAAGAUGUACUGCUU --- -| AA UU AGCUAA GCC UUGGAGCU GGCU GGAU AGGGAAGG A CGG AACCUUGA CCGA CCUA UCUCUUCU U CACGGUCUGUUCUACCUCU- UAC U^ AA CU CAGGAU 110 100 90 80 70 60 |
| Deep sequencing | |
| Comment | Derived for Dasyuridae. |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Sha-Novel-4_5p |
| mirBase accession | None |
| Sequence |
0- UGGCUAAGGAUUUAGGGAAGG -21
Get sequence
|
| Star sequence | Sha-Novel-4_3p* |
| mirBase accession | None |
| Sequence |
37- UUCUCUUCAUCCAAAGCCUAGU -59
Get sequence
|
