MirGeneDB 2.1

MirGeneDB ID

Sha-Novel-9

Family name SHA-NOVEL-9 (all species)
Seed ACUCACA
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. harrisii
Node of Origin (family) S. harrisii
Genome context
(DEVIL_add)
GL857025.1: 661380-661436 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAGACUGAAUUCCAGUAACUGGAACAGUUAACUCACAUUAGGCAACCUGCUUCAGCUCGCCCAGCAAGUUGGCUAAUGUGAGUUCACUGAUCCGGUUUCCUCCUCUGUGGAAGAGA
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Structure
        10          20        30        40        50        
GAAGACUGAAUUCCAGU--|      A    U            G    C    UCAGC 
                   AACUGGA CAGU AACUCACAUUAG CAAC UGCU     \
                   UUGGCCU GUCA UUGAGUGUAAUC GUUG ACGA     U
AGAGAAGGUGUCUCCUCCU^      A    C            G    A    CCCGC 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Mature sequence

Sha-Novel-9_5p

mirBase accessionNone
Sequence
0- AACUCACAUUAGGCAACCUGCU -22
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Co-mature sequence

Sha-Novel-9_3p

mirBase accessionNone
Sequence
35- CAAGUUGGCUAAUGUGAGUUCA -57
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