| MirGeneDB ID | Sko-Mir-4823 |
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| Family name |
MIR-4823 (all species) |
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| Seed |
CCAGUUU |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4823
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. kowalevskii
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| Node of Origin (family) |
S. kowalevskii
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Genome context
(Skow_1.1) |
NW_003108582.1: 122848-122914 [-]
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Precursor
(pre-Mir +30nt flank) |
AACGACAAGCAUUCGUUUCUUACAUCGACUUGAGUAGACAAUCAACUGACCGUAGCGGGCGCUAAAUUGUUUUCGACCAGUUUGUUGUCUAUUCGAGCCCGUGUAUGUAUAUUCUACGUCCAAAGAG
Get precursor sequence
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| Structure | 10 20 30 40 50 60
AACGACAAGCAUUCGUUUCU--| U A- C AC UAGCGGGCGC
UACA CG CUUGAGUAGACAAU AACUG CG \
AUGU GC GAGCUUAUCUGUUG UUGAC GC U
GAGAAACCUGCAUCUUAUAUGU^ - CC U CA UUUUGUUAAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Sko-Mir-4823_5p* |
| mirBase accession | MIMAT0020027 |
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| Sequence |
0- UGAGUAGACAAUCAACUGACCG -22
Get sequence
|
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| Mature sequence |
Sko-Mir-4823_3p |
| mirBase accession | MIMAT0020028 |
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| Sequence |
45- ACCAGUUUGUUGUCUAUUCGAG -67
Get sequence
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