| MirGeneDB ID | Sko-Mir-4824 |
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| Family name |
MIR-4824 (all species) |
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| Seed |
AACUUAC |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4824
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| Paralogues |
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| Orthologues |
Pfl-Mir-4824
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Skow_1.1) |
NW_003135336.1: 702311-702373 [-]
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Precursor
(pre-Mir +30nt flank) |
UAGUGAAAUCUGUUGCAUCCCACUAUUUGAUAACUUACCAAAUUGAGCUGGUGUUUUUCUUGUUGCUUUCACCAGUCAGUUUUGUAAGUUACCAAAUGGCUGGAACCAACCAACUAUACAACA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UAGUGAAAUCUGUUGCAUC- -| A C G UUUUUCU
CCA CUAUUUG UAACUUAC AAAUUGA CUGGUG U
GGU GGUAAAC AUUGAAUG UUUGACU GACCAC G
ACAACAUAUCAACCAACCAA C^ C U - UUUCGUU
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | Although there is no star recorded for Mir-4824 expression of the 5p arm is deeply conserved across enteropneusts. |
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Sko-Mir-4824_5p |
| mirBase accession | MIMAT0020029 |
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| Sequence |
0- UAACUUACCAAAUUGAGCUGGUGU -24
Get sequence
|
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| Star sequence |
Sko-Mir-4824_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
40- ACCAGUCAGUUUUGUAAGUUACC -63
Get sequence
|
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