| MirGeneDB ID | Sko-Mir-4826 |
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| Family name |
MIR-4826 (all species) |
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| Seed |
AUCCGAU |
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| Species |
Saccoglossus (Saccoglossus kowalevskii) |
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| MiRBase ID |
sko-mir-4826
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| Paralogues |
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| Orthologues |
Pfl-Mir-4826
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| Node of Origin (locus) |
Enteropneusta
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| Node of Origin (family) |
Enteropneusta
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Genome context
(Skow_1.1) |
NW_003111485.1: 19771-19832 [+]
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Precursor
(pre-Mir +30nt flank) |
CCCGAAUAUGGCAAAGUUGUUGCUACUGGCCAUCCGAUAACAAGUGUUGGAUAUGGAAUCAAGCACGAAUCCAACACUUCAAAUCGGAUCGUCGGUAGCGAUGUCAAACUACAAUAGAAAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCCGAAUAUGGCAAAGUU--| C AAC AUGGAAU
GUUGCUACUGGC AUCCGAU AAGUGUUGGAU C
UAGCGAUGGCUG UAGGCUA UUCACAACCUA A
UAAAAGAUAACAUCAAACUG^ C AAC AGCACGA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Sko-Mir-4826_5p |
| mirBase accession | MIMAT0020032 |
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| Sequence |
0- CAUCCGAUAACAAGUGUUGGAUA -23
Get sequence
|
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| Star sequence |
Sko-Mir-4826_3p* |
| mirBase accession | MIMAT0020033 |
|---|
| Sequence |
39- UCCAACACUUCAAAUCGGAUCGU -62
Get sequence
|
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