MirGeneDB ID | Sne-Novel-1 |
Family name |
SNE-NOVEL-1 (all species) |
Seed |
UUGACAA |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
S. nebaliae
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_1031: 2888-3018 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUUCAUUUUUCUGUUUCAAAUCGCAAGUCACUUGACAAUGGUCGAUUGGAAUAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAAAGUUGUGAAUUGAAAAUUUCCCCGCGAAUCAAAUGGGUUAAGUAUUCUAAUCAGCUCUUGUCAAUUGAAUUUCGAUCACGUUCAUUUCAUCAUUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80 90
AUUCAUUUUUCUGUUUCAA--| C G C U C UAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAA
AUCG AA UCA UUGACAA GGU GAUUGGAA \
UAGC UU AGU AACUGUU UCG CUAAUCUU A
AACUUACUACUUUACUUGCAC^ U A U C A AUGAAUUGGGUAAACUAAGCGCCCCUUUAAAAGUUAAGUGUUG
. 180 170 160 150 140 130 120 110 100 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
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Mature sequence |
Sne-Novel-1_5p |
mirBase accession | None |
Sequence |
0- CUUGACAAUGGUCGAUUGGAA -21
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|
Star sequence |
Sne-Novel-1_3p* |
mirBase accession | None |
Sequence |
109- UCUAAUCAGCUCUUGUCAAUUG -131
Get sequence
|