MirGeneDB 3.0

MirGeneDB ID

Sne-Novel-1

Family name SNE-NOVEL-1 (all species)
Seed UUGACAA
Species Seison (Seison nebaliae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. nebaliae
Node of Origin (family) S. nebaliae
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual)
k141_1031: 2888-3018 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCAUUUUUCUGUUUCAAAUCGCAAGUCACUUGACAAUGGUCGAUUGGAAUAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAAAGUUGUGAAUUGAAAAUUUCCCCGCGAAUCAAAUGGGUUAAGUAUUCUAAUCAGCUCUUGUCAAUUGAAUUUCGAUCACGUUCAUUUCAUCAUUCAA
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Structure
        10          20        30        40        50        60        70        80        90     
AUUCAUUUUUCUGUUUCAA--|   C  G   C       U   C        UAUUUUUCUCAACUCUCUUCUAUAUAAUGACUGACUAUAAUAA 
                     AUCG AA UCA UUGACAA GGU GAUUGGAA                                           \
                     UAGC UU AGU AACUGUU UCG CUAAUCUU                                           A
AACUUACUACUUUACUUGCAC^   U  A   U       C   A        AUGAAUUGGGUAAACUAAGCGCCCCUUUAAAAGUUAAGUGUUG 
 .       180       170       160       150       140       130       120       110       100
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Po
Mature sequence

Sne-Novel-1_5p

mirBase accessionNone
Sequence
0- CUUGACAAUGGUCGAUUGGAA -21
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Star sequence

Sne-Novel-1_3p*

mirBase accessionNone
Sequence
109- UCUAAUCAGCUCUUGUCAAUUG -131
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