| MirGeneDB ID | Sne-Novel-10 |
|---|
| Family name |
SNE-NOVEL-10 (all species) |
|---|
| Seed |
ACAUGUA |
|---|
| Species |
Seison (Seison nebaliae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_4594: 80636-80728 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUCUUCUCCGAAAAACAUAGUCAAAUGUGUCGUUCAAUCUCGGUUCAUGUUAUCUUGCCGAAACGAAACUUUCGUCGUCAUCGACAAUUGAUAUACAAUGAUACAUGUACGUGAUUGGACGAUGAAUUCGACUAUCUAUCAUCAUCUCAAUAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
AUCUUCUCCGAAAAACA--| A G U GUU U UUGCCGAAACGAAACUUUCGUC
UAGUC AAU UGUCGUUCAAUC CG CAUGU AUC \
AUCAG UUA GUAGCAGGUUAG GC GUACA UAG G
AAUAACUCUACUACUAUCU^ C A U AU- - UAACAUAUAGUUAACAGCUACU
150 140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sne-Novel-10_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CGUUCAAUCUCGGUUCAUGUUAUC -24
Get sequence
|
|---|
| Mature sequence |
Sne-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
71- UACAUGUACGUGAUUGGACGAU -93
Get sequence
|
|---|
