| MirGeneDB ID | Sne-Novel-12 |
|---|
| Family name |
SNE-NOVEL-12 (all species) |
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| Seed |
AAAUUUG |
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| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. nebaliae
|
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| Node of Origin (family) |
S. nebaliae
|
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Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_4832: 81516-81624 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUCGAUCCAUACGUAAUCGAUAGAACUAGUACCCUGUAUAAGAUCAAAAUUUGUGUCGAUUUUUUAAUCGAUUUUUGUCUGAAAGUCGUUGGCCAUAUAUAAUGUGUCAUAAUAUCACAAAUUUGAUCUCACAGGGUGCCAUGUCCAUCGAUGAACAGCGAAAAAGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80
CUCGAUCCAUACGUAAU--| A ACUA AUA A UCGAUUUUUUAAUCGAUUUUUGUCUGAAA
CGAU GA GUACCCUGU AGAUCAAA UUUGUG G
GCUA CU CGUGGGACA UCUAGUUU AAACAC U
AAAGAAAAAGCGACAAGUA^ C GUAC C-- - UAUAAUACUGUGUAAUAUAUACCGGUUGC
160 150 140 130 120 110 100 90 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Sne-Novel-12_5p* |
| mirBase accession | None |
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| Sequence |
0- ACCCUGUAUAAGAUCAAAAUUUGUG -25
Get sequence
|
|---|
| Mature sequence |
Sne-Novel-12_3p |
| mirBase accession | None |
|---|
| Sequence |
87- CAAAUUUGAUCUCACAGGGUGC -109
Get sequence
|
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