MirGeneDB ID | Sne-Novel-2 |
Family name |
SNE-NOVEL-2 (all species) |
Seed |
GAAUUUC |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
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Paralogues |
|
Orthologues |
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Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
S. nebaliae
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_2149: 27108-27225 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAACGGAAACUAUUUCUCAUUCUUUUCGCAUUUGGCAUAAUUGGAAUUUAUCUUUGAGUGUCAUCUUGUUCGGGUGGGAGUCCAUUCCUCCAAAAAUUUAUUUGAAAGAACAAAAUCUAAACAGGUGAAUUUCUCUGAUGCCAAUGCCAACAGUGAGUGUUAUCGUCAAACAAUCAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80
CAAACGGAAACUAUUUCU UUUUC--| U AAUU UUUGAGUGUCAUCUUGUUCGGGUGGGAGUCCAUUC
CAUUC GCAUU GGCAU GGAAUUUAUC \
GUGAG CGUAA CCGUA CUUUAAGUGG C
AACUAACAAACUGCUAUU UGACAAC^ - GUCU ACAAAUCUAAAACAAGAAAGUUUAUUUAAAAACCU
170 160 150 140 130 120 110 100 90 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sne-Novel-2_5p* |
mirBase accession | None |
Sequence |
0- AUUUGGCAUAAUUGGAAUUUAUC -23
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|
Mature sequence |
Sne-Novel-2_3p |
mirBase accession | None |
Sequence |
96- UGAAUUUCUCUGAUGCCAAUGC -118
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|