MirGeneDB ID | Sne-Novel-3 |
Family name |
SNE-NOVEL-3 (all species) |
Seed |
UGUAUCA |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
S. nebaliae
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_1823: 16095-16213 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUAUGAUUAUAAAAAUAUCUUGUUGACAUUAUGUAUCAGUAGCACAGGCGUUAUCUAUAACCCAGUGUAAGGGGAUUAUUACACAAUACCUAAUACCUAAUAUCCUCUUACAAUGCGUUAUAGAUAACGCCUGUGCGAUUGAUACAUAUUUUCAUAAUAAUAUGAACGAAAUGUCAAUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70 80
CUAUGAUUAUAAAAAUAUCUUGU--| CAU A UAUCUAUAACCCAGUGUAAGGGGAUUAUUACACAAUA
UGA UAUGUAUCAGU GCACAGGCGU \
ACU AUACAUAGUUA CGUGUCCGCA C
UUAACUGUAAAGCAAGUAUAAUAAU^ UUU G AUAGAUAUUGCGUAACAUUCUCCUAUAAUCCAUAAUC
170 160 150 140 130 120 110 100 90 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Sne-Novel-3_5p |
mirBase accession | None |
Sequence |
0- AUGUAUCAGUAGCACAGGCGU -21
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|
Star sequence |
Sne-Novel-3_3p* |
mirBase accession | None |
Sequence |
98- GCCUGUGCGAUUGAUACAUAU -119
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|