MirGeneDB 3.0

MirGeneDB ID

Sne-Novel-4

Family name SNE-NOVEL-4 (all species)
Seed GAGUAUU
Species Seison (Seison nebaliae)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) S. nebaliae
Node of Origin (family) S. nebaliae
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual)
k141_2644: 39258-39350 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UACACAAUUCAUUUAUCCACUUAUUCUAAUUGAGUAUUCGCACUAGUAUUGAUUGAGGAAAUUAUGUAAUCAAUUAAUUCUUCCUUUAUUAAUGCCAGUUCAAUACAGUUGCGCUUACUCAAUUAAUAAGAAGAUCCUCAUCGCUCAUCGUCU
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Structure
        10            20        30        40         50        60        70      
UACACAAUUCAUUUAUCCA----|    UC          UU    -  A       UUGAGGAAAUUAUGUAAUCAAUU 
                       CUUAU  UAAUUGAGUA  CGCA CU GUAUUGA                       \
                       GAAUA  AUUAACUCAU  GCGU GA CAUAACU                       A
UCUGCUACUCGCUACUCCUAGAA^    --          UC    U  -       UGACCGUAAUUAUUUCCUUCUUA 
 150       140       130         120       110        100        90        80
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Po
Mature sequence

Sne-Novel-4_5p

mirBase accessionNone
Sequence
0- UGAGUAUUCGCACUAGUAUUGA -22
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Star sequence

Sne-Novel-4_3p*

mirBase accessionNone
Sequence
71- AAUACAGUUGCGCUUACUCAAU -93
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