MirGeneDB ID | Sne-Novel-4 |
Family name |
SNE-NOVEL-4 (all species) |
Seed |
GAGUAUU |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
S. nebaliae
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_2644: 39258-39350 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UACACAAUUCAUUUAUCCACUUAUUCUAAUUGAGUAUUCGCACUAGUAUUGAUUGAGGAAAUUAUGUAAUCAAUUAAUUCUUCCUUUAUUAAUGCCAGUUCAAUACAGUUGCGCUUACUCAAUUAAUAAGAAGAUCCUCAUCGCUCAUCGUCU
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
UACACAAUUCAUUUAUCCA----| UC UU - A UUGAGGAAAUUAUGUAAUCAAUU
CUUAU UAAUUGAGUA CGCA CU GUAUUGA \
GAAUA AUUAACUCAU GCGU GA CAUAACU A
UCUGCUACUCGCUACUCCUAGAA^ -- UC U - UGACCGUAAUUAUUUCCUUCUUA
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Sne-Novel-4_5p |
mirBase accession | None |
Sequence |
0- UGAGUAUUCGCACUAGUAUUGA -22
Get sequence
|
Star sequence |
Sne-Novel-4_3p* |
mirBase accession | None |
Sequence |
71- AAUACAGUUGCGCUUACUCAAU -93
Get sequence
|