| MirGeneDB ID | Sne-Novel-5 |
|---|
| Family name |
SNE-NOVEL-5 (all species) |
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| Seed |
GAAUUUC |
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| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
S. nebaliae
|
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| Node of Origin (family) |
S. nebaliae
|
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Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_2149: 27108-27225 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAACGGAAACUAUUUCUCAUUCUUUUCGCAUUUGGCAUAAUUGGAAUUUAUCUUUGAGUGUCAUCUUGUUCGGGUGGGAGUCCAUUCCUCCAAAAAUUUAUUUGAAAGAACAAAAUCUAAACAGGUGAAUUUCUCUGAUGCCAAUGCCAACAGUGAGUGUUAUCGUCAAACAAUCAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80
CAAACGGAAACUAUUUCU UUUUC--| U AAUU UUUGAGUGUCAUCUUGUUCGGGUGGGAGUCCAUUC
CAUUC GCAUU GGCAU GGAAUUUAUC \
GUGAG CGUAA CCGUA CUUUAAGUGG C
AACUAACAAACUGCUAUU UGACAAC^ - GUCU ACAAAUCUAAAACAAGAAAGUUUAUUUAAAAACCU
170 160 150 140 130 120 110 100 90 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Star sequence |
Sne-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUUUGGCAUAAUUGGAAUUUAUC -23
Get sequence
|
|---|
| Mature sequence |
Sne-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
96- UGAAUUUCUCUGAUGCCAAUGC -118
Get sequence
|
|---|
