| MirGeneDB ID | Sne-Novel-5 |
|---|
| Family name |
SNE-NOVEL-5 (all species) |
|---|
| Seed |
AAGUUCU |
|---|
| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
|
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| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_3687: 7012-7091 [-]
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
UACUUCUUCAACAAUAUAAUUCAUAAAAAUUAAGUUCUCAUUUUAUUUCAUGAUAGUUCCCUAAACUGAAUGAUAAGUAUCAAUUCGUGGAAUAAAAUAGUGAACUUGAUUGUUACGGAAUUAAUAGCUUCAAUCAUUUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UACUUCUUCAACAAUAU- AUAAA- UC-| AUAGUUCCCUAAACUG
AAUUC AAUUAAGUUC AUUUUAUUUCAUG \
UUAAG UUAGUUCAAG UAAAAUAAGGUGC A
AUUUACUAACUUCGAUAA GCAUUG UGA^ UUAACUAUGAAUAGUA
. 130 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
|---|
| Mature sequence |
Sne-Novel-5_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UAAGUUCUCAUUUUAUUUCAUG -22
Get sequence
|
|---|
| Star sequence |
Sne-Novel-5_3p* |
| mirBase accession | None |
|---|
| Sequence |
56- GUGGAAUAAAAUAGUGAACUUGAU -80
Get sequence
|
|---|
