| MirGeneDB ID | Sne-Novel-6 |
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| Family name |
SNE-NOVEL-6 (all species) |
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| Seed |
AUGUGAC |
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| Species |
Seison (Seison nebaliae) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
S. nebaliae
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| Node of Origin (family) |
S. nebaliae
|
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Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_4406: 35972-36100 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAUUUCAAUCUUUUCAAAUGAUUAUCGUUCAUGUGACCACAGACCCUUUCCUUGAAGUGCAUUCAACUAUAAAUUCGAUUGCAUGAAAAAUUCAUAAUAUUAUGAUGAUUUCUUUCGCAACUUUCGUUUCUAUUGGAAAAGAUGUGUGGUCGCAUAAUCGAUCAUAUGAAACUAUCAACGUCUCUCCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80 90
UCAUUUCAAUCUUUUCAA-----| UUA UUC GACCC UUGAAGUGCAUUCAACUAUAAAUUCGAUUGCAUGAAAAAUU
AUGA UCG AUGUGACCACA UUUCC \
UACU AGC UACGCUGGUGU AAAGG C
ACCUCUCUGCAACUAUCAAAGUA^ --- UAA GUAGA UUAUCUUUGCUUUCAACGCUUUCUUUAGUAGUAUUAUAAUA
180 170 160 150 140 130 120 110 100 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
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| Mature sequence |
Sne-Novel-6_5p |
| mirBase accession | None |
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| Sequence |
0- CAUGUGACCACAGACCCUUUCC -22
Get sequence
|
|---|
| Star sequence |
Sne-Novel-6_3p* |
| mirBase accession | None |
|---|
| Sequence |
108- AAAGAUGUGUGGUCGCAUAAU -129
Get sequence
|
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