MirGeneDB ID | Sne-Novel-7 |
Family name |
SNE-NOVEL-7 (all species) |
Seed |
ACAUGUA |
Species |
Seison (Seison nebaliae) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
S. nebaliae
|
Node of Origin (family) |
S. nebaliae
|
Genome context (S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_4594: 80636-80728 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCUUCUCCGAAAAACAUAGUCAAAUGUGUCGUUCAAUCUCGGUUCAUGUUAUCUUGCCGAAACGAAACUUUCGUCGUCAUCGACAAUUGAUAUACAAUGAUACAUGUACGUGAUUGGACGAUGAAUUCGACUAUCUAUCAUCAUCUCAAUAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60 70
AUCUUCUCCGAAAAACA--| A G U GUU U UUGCCGAAACGAAACUUUCGUC
UAGUC AAU UGUCGUUCAAUC CG CAUGU AUC \
AUCAG UUA GUAGCAGGUUAG GC GUACA UAG G
AAUAACUCUACUACUAUCU^ C A U AU- - UAACAUAUAGUUAACAGCUACU
150 140 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Sne-Novel-7_5p* |
mirBase accession | None |
Sequence |
0- CGUUCAAUCUCGGUUCAUGUUAUC -24
Get sequence
|
Mature sequence |
Sne-Novel-7_3p |
mirBase accession | None |
Sequence |
71- UACAUGUACGUGAUUGGACGAU -93
Get sequence
|