| MirGeneDB ID | Sne-Novel-9 |
|---|
| Family name |
SNE-NOVEL-9 (all species) |
|---|
| Seed |
AAAUUUG |
|---|
| Species |
Seison (Seison nebaliae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. nebaliae
|
|---|
| Node of Origin (family) |
S. nebaliae
|
|---|
Genome context
(S.nebaliae-strainB-GA2.2-3295Contigs_manual) |
k141_4832: 81516-81624 [+]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
CUCGAUCCAUACGUAAUCGAUAGAACUAGUACCCUGUAUAAGAUCAAAAUUUGUGUCGAUUUUUUAAUCGAUUUUUGUCUGAAAGUCGUUGGCCAUAUAUAAUGUGUCAUAAUAUCACAAAUUUGAUCUCACAGGGUGCCAUGUCCAUCGAUGAACAGCGAAAAAGAAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70 80
CUCGAUCCAUACGUAAU--| A ACUA AUA A UCGAUUUUUUAAUCGAUUUUUGUCUGAAA
CGAU GA GUACCCUGU AGAUCAAA UUUGUG G
GCUA CU CGUGGGACA UCUAGUUU AAACAC U
AAAGAAAAAGCGACAAGUA^ C GUAC C-- - UAUAAUACUGUGUAAUAUAUACCGGUUGC
160 150 140 130 120 110 100 90 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Sne-Novel-9_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCCUGUAUAAGAUCAAAAUUUGUG -25
Get sequence
|
|---|
| Mature sequence |
Sne-Novel-9_3p |
| mirBase accession | None |
|---|
| Sequence |
87- CAAAUUUGAUCUCACAGGGUGC -109
Get sequence
|
|---|
