MirGeneDB ID | Sro-Novel-1 |
---|---|
Family name | SRO-NOVEL-1 (all species) |
Seed | GUGACCG |
Species | Roscoff worm (Symsagittifera roscoffensis) |
MiRBase ID | |
Paralogues | |
Orthologues | |
Node of Origin (locus) | S. roscoffensis |
Node of Origin (family) | S. roscoffensis |
Genome context (GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010001102.1: 64632-64698 [-] UCSC Ensembl |
Precursor (pre-Mir +30nt flank) | AUUUGACUGUUGAACCCGAUCUUUUCACUUUGUGACCGUAAGUAGAAUCUUGAGAAUUUCCAGUUGAACAAACUCAAGAUAUACAUUCGGUCACCACUCGAAAGGUUCACGAAAAAAAAGUCAGGAAGet precursor sequence |
Structure | 10 20 30 40 50 60 AUUUGACUGUUGAACCC--| U ACUUU UAA GA GAAUUUCCA GA CUUUUC GUGACCG GUA AUCUUGA G CU GGAAAG CACUGGC CAU UAGAACU U AAGGACUGAAAAAAAAGCA^ U CUCAC UUA A- CAAACAAGU 120 110 100 90 80 70 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Mature sequence | Sro-Novel-1_5p |
mirBase accession | None |
Sequence |
0- UGUGACCGUAAGUAGAAUCUUGA -23
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|
Star sequence | Sro-Novel-1_3p* |
mirBase accession | None |
Sequence |
45- AAGAUAUACAUUCGGUCACCAC -67
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|