| MirGeneDB ID | Sro-Novel-1 |
|---|
| Family name |
SRO-NOVEL-1 (all species) |
|---|
| Seed |
GUGACCG |
|---|
| Species |
Roscoff worm (Symsagittifera roscoffensis) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
S. roscoffensis
|
|---|
| Node of Origin (family) |
S. roscoffensis
|
|---|
Genome context
(GCA_025153585.1_SymRos_1_5_genomic) |
JANVAR010001102.1: 64632-64698 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AUUUGACUGUUGAACCCGAUCUUUUCACUUUGUGACCGUAAGUAGAAUCUUGAGAAUUUCCAGUUGAACAAACUCAAGAUAUACAUUCGGUCACCACUCGAAAGGUUCACGAAAAAAAAGUCAGGAA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUUUGACUGUUGAACCC--| U ACUUU UAA GA GAAUUUCCA
GA CUUUUC GUGACCG GUA AUCUUGA G
CU GGAAAG CACUGGC CAU UAGAACU U
AAGGACUGAAAAAAAAGCA^ U CUCAC UUA A- CAAACAAGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Sro-Novel-1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGUGACCGUAAGUAGAAUCUUGA -23
Get sequence
|
|---|
| Star sequence |
Sro-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
45- AAGAUAUACAUUCGGUCACCAC -67
Get sequence
|
|---|
