| MirGeneDB ID | Sto-Novel-2 |
|---|
| Family name |
CHO-NOVEL-2 (all species) |
|---|
| Seed |
UUUUUGC |
|---|
| Species |
Cloudy Catshark (Scyliorhinus torazame) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Cmi-Novel-2
|
|---|
| Node of Origin (locus) |
Chondrichthyes
|
|---|
| Node of Origin (family) |
Chondrichthyes
|
|---|
Genome context
(GCA_003427355_STO_add) |
BFAA01003193.1: 112829-112888 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
CACGACAUCACGCGUAAGCGGCGUGAUGACGUUUUUGCGACGCGAUGACGUUUUUCGACACAAGUUACAUCAUCACGACGCGAAUUACGUCAUCGCGUCGCGUGGUUACGAGACAGGAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CACGACAUCACGCGUAA-- U-| A C C UUUUCGA
GCGGCGUGAUGACGU UUUGCG CG GAUGA GU \
CGCUGCGCUACUGCA AAGCGC GC CUACU CA C
AGAGGACAGAGCAUUGGUG UU^ A A A UUGAACA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Sto-Novel-2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- GUUUUUGCGACGCGAUGACGU -21
Get sequence
|
|---|
| Star sequence |
Sto-Novel-2_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- AUCAUCACGACGCGAAUUACGU -60
Get sequence
|
|---|
