| MirGeneDB ID | Tgu-Mir-1559 |
|---|
| Family name |
MIR-1559 (all species) |
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| Seed |
UCGAUGC |
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| Species |
Zebra finch (Taeniopygia guttata) |
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| MiRBase ID |
tgu-mir-1559
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1559
Gga-Mir-1559
|
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| Node of Origin (locus) |
Neognathae
|
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| Node of Origin (family) |
Neognathae
|
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Genome context
(TaeGut1_add) |
7: 26224204-26224263 [-]
UCSC
Ensembl
|
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Precursor
(pre-Mir +30nt flank) |
CGAGUGUGGGAUGCUGAGGUCUAGACUCCUUUCGAUGCUUGUAUGCUACUCCCAGGAAUGCCAACAGGAGUUCCAUGGAUGCAUCGAGCAGAGACUAUACCACUGACACCACAGCACGGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGAGUGUGGGAUGCUGA--| C A CU UUG CU CAGGAA
GGU UAG CUC UUCGAUGC UAUG ACUCC U
CCA AUC GAG GAGCUACG GUAC UGAGG G
AGGCACGACACCACAGUCA^ U A AC UAG CU ACAACC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Tgu-Mir-1559_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCGAUGCUUGUAUGCUACUCC -22
Get sequence
|
|---|
| Star sequence |
Tgu-Mir-1559_3p* (predicted) |
| mirBase accession | MIMAT0014526 |
|---|
| Sequence |
38- AGUUCCAUGGAUGCAUCGAGCA -60
Get sequence
|
|---|
