MirGeneDB ID | Tni-Mir-8160-P2 |
Family name |
MIR-8160 (all species) |
Seed |
GAAUAAU |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Gmo-Mir-8160-P2
Mal-Mir-8160-P2
|
Node of Origin (locus) |
Acanthomorpha
|
Node of Origin (family) |
Acanthomorpha
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
Un_random: 13327022-13327081 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGAAGUGACCUAGUUUUGUGUGCUGGUCAGAAUAAUGCCAGCAGUCAGCCAUGUUGUCAGCAUCAGGCCUGUGCUAGUGUUAUUGAAACCAACAUGAANNNNNNNNNNNNNNNNNNNN
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGAAGUGACCUAGUU----|UG GC CAG C GU - AUGUUGU
U UGU UGGU AAUAAUGC AGCA CAG CC \
A ACA ACCA UUAUUGUG UCGU GUC GG C
NNNNNNNNNNNNNNNNNNNNA^GU -- AAG A -- C ACUACGA
. 110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Tni-Mir-8160-P2_5p (predicted) |
mirBase accession | None |
Sequence |
0- AGAAUAAUGCCAGCAGUCAGCC -22
Get sequence
|
Star sequence |
Tni-Mir-8160-P2_3p* (predicted) |
mirBase accession | None |
Sequence |
39- CCUGUGCUAGUGUUAUUGAAA -60
Get sequence
|