| MirGeneDB ID | Tni-Novel-1 |
|---|
| Family name |
TNI-NOVEL-1 (all species) |
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| Seed |
CUCGCAG |
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| Species |
Pufferfish (Tetraodon nigroviridis) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
T. nigroviridis
|
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| Node of Origin (family) |
T. nigroviridis
|
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Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
1: 14203636-14203691 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGCUUCCGGCGGAAGGAUAUGCUUCGGGGCACCUCGGCUCUCGGCGACUCCUGUGACUGCGCGGACUCGCAGAGAGUCGGAGACUUUCCGCCGCUGGACGAGAAAAAGCUCGCCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UGCUUCCGGCGGAAGGAUAU-- UU CAC -| G C UGUGA
GC CGGGG CU CGGCUCUC GCGA UCC \
CG GCCUU GA GCUGAGAG CGCU AGG C
UACCGCUCGAAAAAGAGCAGGU CC UCA G^ A C CGCGU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Star sequence |
Tni-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- ACCUCGGCUCUCGGCGACUCC -21
Get sequence
|
|---|
| Mature sequence |
Tni-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
34- ACUCGCAGAGAGUCGGAGACUU -56
Get sequence
|
|---|
