MirGeneDB 3.0

MirGeneDB ID

Xbo-Novel-1

Family name XBO-NOVEL-1 (all species)
Seed GAUGACA
Species Xenoturbella (Xenoturbella bocki)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) X. bocki
Node of Origin (family) X. bocki
Genome context
(genome.xe)
scaffold537: 80030-80088 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AACGUGAGAAUAAGAGGACCAUGCCUGAUUCUUUGCCUCAUUUGUCAUGUCAUUCUCCUAAAGGUAAUGAUGACAAGUGAGACAAUGGACCUUGUAUGGCUAUAAACAACGCUAGCAGC
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Structure
        10          20        30        40        50          
AACGUGAGAAUAAGAGGA--|     CUGA   U   C           UG     CUCCU 
                    CCAUGC    UUC UUG CUCAUUUGUCA  UCAUU     \
                    GGUAUG    AGG AAC GAGUGAACAGU  AGUAA     A
CGACGAUCGCAACAAAUAUC^     UUCC   U   A           --     UGGAA 
       110       100        90        80          70
Deep sequencing
3' NTU No
MotifsCNNC at 3p(+17)
Star sequence

Xbo-Novel-1_5p*

mirBase accessionNone
Sequence
0- CUUUGCCUCAUUUGUCAUGUCAUU -24
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Mature sequence

Xbo-Novel-1_3p

mirBase accessionNone
Sequence
37- UGAUGACAAGUGAGACAAUGGA -59
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