| MirGeneDB ID | Xbo-Novel-10 |
|---|
| Family name |
XBO-NOVEL-10 (all species) |
|---|
| Seed |
CAGCAUU |
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| Species |
Xenoturbella (Xenoturbella bocki) |
|---|
| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
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| Node of Origin (locus) |
X. bocki
|
|---|
| Node of Origin (family) |
X. bocki
|
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Genome context
(genome.xe) |
scaffold9008: 686-745 [+]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
UUAGGGGUGAGGUGUGUACAUGGUAUGUUGUCAGCAUUACAUUUGGUUGCAUGUAAUGGCAGAGAGAUGGAGCCAUAUGUAGGGCUGACAGCAUGCCAUGCUCAGUCAACAGGGAUCGCC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUAGGGGUGAGGUGUGUA--| A U G GUAAUG
CAUGGUAUGUUGUCAGC UUACAU UGGUU CAU G
GUACCGUACGACAGUCG GAUGUA ACCGA GUA C
CCGCUAGGGACAACUGACUC^ G U G GAGAGA
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Xbo-Novel-10_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UCAGCAUUACAUUUGGUUGCAU -22
Get sequence
|
|---|
| Co-mature sequence |
Xbo-Novel-10_3p |
| mirBase accession | None |
|---|
| Sequence |
38- GGAGCCAUAUGUAGGGCUGACA -60
Get sequence
|
|---|
